Our Publications

2008

• Jin P. Szatkiewicz, Glen L. Beane, Yueming Ding, Lucie Hutchins, Fernando Pardo-Manuel de Villena, Gary A. Churchill
  An imputed genotype resource for the laboratory mouse (Published in Mamm Genome. Feb'08 ). Pre-Print

2007

• Graber JH, Hutchins LN, Salisbury J, Blumenthal T.
  C. elegans sequences that control trans-splicing and operon pre-mRNA processing
  RNA. 2007; in press.
• Petkov PM, Graber JH, Churchill GA, DiPetrillo K, King BL, Paigen K.
  Evidence of a large-scale functional organization of Mammalian chromosomes
  PLoS Biol. 2007 May;5(5):e127; PMID: 17503963
• Liu D, Brockman JM, Dass B, Hutchins LN, Singh P, McCarrey JR, MacDonald CC, Graber JH.
  Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis
  Nucleic Acids Res. 2007;35(1):234-46. Epub 2006 Dec 8. PMID: 17158511

2006

• Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P, Eppig JJ, Solter D, Knowles BB.
  Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo.
  Genes Dev. 2006 Oct 1;20(19):2713-27. PMID: 17015433
• Graber JH, Churchill GA, Dipetrillo KJ, King BL, Petkov PM, Paigen K.
  Patterns and mechanisms of genome organization in the mouse
  J Exp Zoolog A Comp Exp Biol. 2006 Sep 1;305(9):683-8. PMID: 16902958
• Salisbury J, Hutchison KW, Graber JH.
  A multispecies comparison of the metazoan 3'-processing downstream elements and the CstF-64 RNA recognition motif
  BMC Genomics. 2006 Mar 16; 7:55. PMID: 16542450
• Liu D, Graber JH.
  Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation
  BMC Bioinformatics. 2006 Feb 17; 7(1):77. PMID: 16503995.

2005-1998

• Petkov PM, Graber JH, Churchill GA, Dipetrillo K, King BL, Paigen K.
  Evidence of a Large-Scale Functional Organization of Mammalian Chromosomes.
  PLoS Genet. 2005 Sep 9;1(3):e33. PMID: 16163395
• Brockman JM, Singh P, Liu D, Quinlan S, Salisbury J, Graber JH.
  PACdb: PolyA Cleavage Site and 3'-UTR Database.
  Bioinformatics. 2005 Sep 15;21(18):3691-3. Epub 2005 Jul 19. PMID: 16030070
• Peaston AE, Evsikov AV, Graber JH, de Vries WN, Holbrook AE, Solter D, Knowles BB.
  Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.
  Dev Cell. 2004 Oct;7(4):597-606. PMID: 15469847
• Graber JH.
  Variations in yeast 3'-processing cis-elements correlate with transcript stability.
  Trends Genet. 2003 Sep;19(9):473-6. PMID: 12957538
• Pervouchine DD, Graber JH, Kasif S.
  On the normalization of RNA equilibrium free energy to the length of the sequence.
  Nucleic Acids Res. 2003 May 1;31(9):e49. PMID: 12711694
• Betley JN, Frith MC, Graber JH, Choo S, Deshler JO.
  A ubiquitous and conserved signal for RNA localization in chordates.
  Curr Biol. 2002 Oct 15;12(20):1756-61. PMID: 12401170
• Graber JH, McAllister GD, Smith TF.
  Probabilistic prediction of Saccharomyces cerevisiae mRNA 3'-processing sites.
  Nucleic Acids Res. 2002 Apr 15;30(8):1851-8. PMID: 11937640
• Graber JH, Cantor CR, Mohr SC, Smith TF.
  In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species.
  Proc Natl Acad Sci U S A. 1999 Nov 23;96(24):14055-60. PMID: 10570197
• Graber JH, Smith CL, Cantor CR.
  Differential sequencing with mass spectrometry.
  Genet Anal. 1999 Feb;14(5-6):215-9. Review. PMID: 10084117
• Graber JH, Cantor CR, Mohr SC, Smith TF.
  Genomic detection of new yeast pre-mRNA 3'-end-processing signals.
  Nucleic Acids Res. 1999 Feb 1;27(3):888-94. PMID: 9889288
• Graber JH, O'Donnell MJ, Smith CL, Cantor CR.
  Advances in DNA diagnostics.
  Curr Opin Biotechnol. 1998 Feb;9(1):14-8. Review. PMID: 9537747