The Arabidopsis PolyA Cleavage Site Database (AtPACdb) is currently in development and
as such is unavailable for reference at this time. Check back in the future
for better data, more organisms, more interface features, and hopefully a
formal paper reference. Thanks!
AtPACdb References (informal) :Below are the reference to:
The Arabidopsis data:
Chromosomal sequences:Five chromosomal sequences were retrieved from TAIR on 2004 April 26
ATH1_chr1.1con.01222004 (Chromosome I)
ATH1_chr2.1con.01222004 (Chromosome II)
ATH1_chr3.1con.01222004 (Chromosome III)
ATH1_chr4.1con.01222004 (Chromosome IV)
ATH1_chr5.1con.01222004 (Chromosome V)
EST Sequences:209,437 Arabidopsis EST sequences were retrieved from NCBI's dbEST database on 2004 June 29th.
Coding Sequences(CDS):27,288 CDS sequences were retrived from TAIR, 2004, September 15
Gene Names of corresponding to Tair IDs:Retrieved from TAIR, 2004, September 15
BLAT--the BLAST-like alignment tool.Kent WJ.
Genome Res. 2002 Apr;12(4):656-64.
GeneSeqer@PlantGDB: Gene structure prediction in plant genomesSchlueter,S.D., Dong,Q. and Brendel,V.
Nucleic Acids Res. 2003 Jul 1;31(13):3597-600
Genbank.Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL.
Nucleic Acids Res 2002 Jan 1;30(1):17-20
NCBI's Stand Alone BLAST:Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs",
Nucleic Acids Res. 25:3389-3402.
NCBI dbEST.Boguski MS, Lowe TM, Tolstoshev CM.
dbEST--database for "expressed sequence tags".
Nat Genet 1993 Aug;4(4):332-3
NCBI Taxonomy DB.Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD,
Tatusova TA, Rapp BA (2000).
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res 2000 Jan 1;28(1):10-4
Gene Ontology: tool for the unification of biology.